PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56080.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 583aa MW: 64456.5 Da PI: 6.3451

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.3	1.3e-11	530	577	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 +rW+ E+ l +av+++G+g+Wk I + + Rt+ ++k++w++ PKA56080.1 530 KRWSSLEESTLRQAVAKYGKGNWKVILKSYAeifEDRTEVDLKDKWRN 577 59*********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MNEPPSSSSD PSSPPALFRH PLSSPTTRPP ADDLANSWIL EFILRQPIPE RLAHDIFLSL 60 PFSSFHPHLR KTLLLRRLSS ELDRQRLSES TLHSLELIEE LDRLNGCPPS DRLKAAYCAA 120 AVECAVAASR RGAGDFAEVV GRIWVGRVVD LARSEAAAGL LSKPLVEWAN RMEQWLTDAE 180 GIEDLMNRDV AAAMRPLSDY LKDAMEGMGP PFLEIAAAEV LDNGLYWRGV ACKEGKEEGD 240 DDRGLTKLNR HLGNSQEQGK ALVNNGNVEK CVRFVDVPMR TLDDNQVNAS RTNLEDGAVT 300 EVSPARDGDS MNGNDSRADE VEEEGLKAGG HKTYKQGIRL NHNVDSGEVR KVKEALIKSY 360 LELQMAVEDP LPEAQATAAA VLASFSRFST IHSGPVKNKE STTVQIPHVQ TVAGGTSNVG 420 TSSGALEKKK CDLMAFADLV DTQPLHNKDL EGRRNVKEFN KFAESSKGTD NVARLNLKEC 480 DTTAQTSEVI SSWSDDSFKS GSEKSHNPIK GKPSLSRLDK GQLMKRRTVK RWSSLEESTL 540 RQAVAKYGKG NWKVILKSYA EIFEDRTEVD LKDKWRNMSR HFL

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MNEPPSSSSD PSSPPALFRH PLSSPTTRPP ADDLANSWIL EFILRQPIPE RLAHDIFLSL  60
PFSSFHPHLR KTLLLRRLSS ELDRQRLSES TLHSLELIEE LDRLNGCPPS DRLKAAYCAA  120
AVECAVAASR RGAGDFAEVV GRIWVGRVVD LARSEAAAGL LSKPLVEWAN RMEQWLTDAE  180
GIEDLMNRDV AAAMRPLSDY LKDAMEGMGP PFLEIAAAEV LDNGLYWRGV ACKEGKEEGD  240
DDRGLTKLNR HLGNSQEQGK ALVNNGNVEK CVRFVDVPMR TLDDNQVNAS RTNLEDGAVT  300
EVSPARDGDS MNGNDSRADE VEEEGLKAGG HKTYKQGIRL NHNVDSGEVR KVKEALIKSY  360
LELQMAVEDP LPEAQATAAA VLASFSRFST IHSGPVKNKE STTVQIPHVQ TVAGGTSNVG  420
TSSGALEKKK CDLMAFADLV DTQPLHNKDL EGRRNVKEFN KFAESSKGTD NVARLNLKEC  480
DTTAQTSEVI SSWSDDSFKS GSEKSHNPIK GKPSLSRLDK GQLMKRRTVK RWSSLEESTL  540
RQAVAKYGKG NWKVILKSYA EIFEDRTEVD LKDKWRNMSR HFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-11	MYB_related family protein