PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56196.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 333aa MW: 36829.2 Da PI: 9.3929

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.1	2.2e-13	25	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + aL+ a +++ +l+rg l++++W+ev++ + ++++++++ qCk++++ l+k+yk + + ++ s++p+f++l+ PKA56196.1 25 CWSEGATEALLGAWSDRFLQLSRGHLRQKDWKEVADSVnarqdAQGKLRKTDGQCKNRIDTLKKKYKLELAKSGP------SSWPFFSRLD 109 7***************************************9999*****************99888875......46**9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MDSGRRSGGG GGGGTGGGGG LREDCWSEGA TEALLGAWSD RFLQLSRGHL RQKDWKEVAD 60 SVNARQDAQG KLRKTDGQCK NRIDTLKKKY KLELAKSGPS SWPFFSRLDL LLGTSPDHSA 120 RRVQSLPAAA DAGSGGHRSL TFKVNQRNPN SSPGPPASLA VSSWGSSRVR TNFRDATQSS 180 RDDNIVGFNA YLDDDMDING EGENENGNTG FLGSLATRKR RQPWGRAVNF SADAVGGDVG 240 NSRALRELAM AIEKIADVYE RVERSKLQQS IEMERQRMEF EKELEIQRMQ TFMDTQLELE 300 KLKRPKYASD SGKLLLNNSC YFFDLHLLKC LIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	TRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-43	Trihelix family protein