PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56232.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 248aa MW: 25946.2 Da PI: 8.4858

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.7e-44	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrrkC++dCv+apyfp +qp+kf nvh++FGasnv+k+l++l++ +reda++sl+yeAe+r+rdPvyG+vg+i+ lq+ql+ql+ +l+++++ PKA56232.1 52 PCAGCKFLRRKCQPDCVFAPYFPPDQPQKFVNVHRVFGASNVTKILNELHPLQREDAVNSLAYEAEMRLRDPVYGCVGIISLLQHQLRQLQIDLSRARS 150 7**********************************************************************************************9988 PP DUF260 100 e 100 e PKA56232.1 151 E 151 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MESLALTAMG NGHGGGASAA SAAAPGLAPN SSSSSSSLSA AAGAGGQTAN SPCAGCKFLR 60 RKCQPDCVFA PYFPPDQPQK FVNVHRVFGA SNVTKILNEL HPLQREDAVN SLAYEAEMRL 120 RDPVYGCVGI ISLLQHQLRQ LQIDLSRARS ELSKYQSAAA GLGMEHFLIP VGQQQQQQQQ 180 QRMVMMRGYA SAADQQMGNG GVAYDPGLMA AMTAPATAAA AMGQFNGQFA RSGTAARGDD 240 RHSTLGST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	1e-62	LBD family protein