PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA56325.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27813.1 Da    PI: 9.4396
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA56325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien +nrqvt+skRr gi+KKA+ELSvLCda v++++fsstgkl +y+s
  PKA56325.1  9 KKIENPTNRQVTYSKRRLGIMKKAKELSVLCDAHVSLLMFSSTGKLADYCS 59
                68***********************************************96 PP
2K-box48.92.8e-1795171173
       K-box   1 yqkssgksleeakae....slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                 yq+++g++l++a++e    ++q+ +++Lk+ +++L++e+R++ Ged+e L++ eL+ Leq +e+sl+ +R++K +  
  PKA56325.1  95 YQHATGVDLWNAQYEarsvRMQETMKQLKEVNQSLRKEIRQRTGEDVEGLEMMELRGLEQSIEESLRIVRQRKLKST 171
                 677777887777766333379****************************************************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGRIEIKK IENPTNRQVT YSKRRLGIMK KAKELSVLCD AHVSLLMFSS TGKLADYCSP  60
STKYSIYNFK SMSFLSPTLF LTLLLGSIKG IIERYQHATG VDLWNAQYEA RSVRMQETMK  120
QLKEVNQSLR KEIRQRTGED VEGLEMMELR GLEQSIEESL RIVRQRKLKS TKEANWALMH  180
ELHMKGEIPQ YDLVAEDPTS VYDSTMSMVN VVPRMFAFNV IHPNQQSLQG IDYDSHDLSL  240
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-46MIKC_MADS family protein