PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56366.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 347aa MW: 38762.1 Da PI: 5.7727

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv++v ++G ++W+ Ia+ g++R +k+c++rw +yl PKA56366.1 12 KGPWTEQEDLQLVCYVSLFGERRWDFIAKVSGLNRNGKSCRLRWVNYL 59 79********************************************97 PP
2	Myb_DNA-binding	49.4	1.1e-15	66	109	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r T+ E++l++d++ ++G++ W++Iar+++ gRt++++k++w+++ PKA56366.1 66 CRITPPEELLILDLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTH 109 678999*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEAVIREERT RKGPWTEQED LQLVCYVSLF GERRWDFIAK VSGLNRNGKS CRLRWVNYLH 60 PGLKRCRITP PEELLILDLH SKWGNRWSRI ARRLPGRTDN EIKNYWRTHT RKMAQERKRG 120 ASRSSSSSSW GSSCVASSRS KQLGVEEPAA AGKEKDEGYW SSLMAAGTGE DGEEAIKVFP 180 MDQIWNEMVT SDSNCSTTDG LSFQQYCRDH EACSMPPPPC DPPPLASSPL WDYCAESLWK 240 MEEGDDYEFN PESFYGAGPV NGSDSGRVDS DPDPNSYMSD QVSNLGQTSA TRVRSTIVHD 300 DPGSPLATLM QIKDSRALAS ANPQWNRCYQ GGKSSPPVLP APPVADS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEAVIREERT RKGPWTEQED LQLVCYVSLF GERRWDFIAK VSGLNRNGKS CRLRWVNYLH  60
PGLKRCRITP PEELLILDLH SKWGNRWSRI ARRLPGRTDN EIKNYWRTHT RKMAQERKRG  120
ASRSSSSSSW GSSCVASSRS KQLGVEEPAA AGKEKDEGYW SSLMAAGTGE DGEEAIKVFP  180
MDQIWNEMVT SDSNCSTTDG LSFQQYCRDH EACSMPPPPC DPPPLASSPL WDYCAESLWK  240
MEEGDDYEFN PESFYGAGPV NGSDSGRVDS DPDPNSYMSD QVSNLGQTSA TRVRSTIVHD  300
DPGSPLATLM QIKDSRALAS ANPQWNRCYQ GGKSSPPVLP APPVADS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	4e-64	MYB family protein