PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56462.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 227aa MW: 25139 Da PI: 5.4847

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.3	4.5e-37	24	120	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk++ r+C+++Cvl+pyfp++++++fan+h++FG +n++++++++++++r+++m+s+++e++a+ardP G+ ++i +l +eq ++e++++ PKA56462.1 24 SCAACKHQHRRCTEECVLRPYFPDDDQQQFANAHRVFGYANITNMIESVDPHRRHETMRSIMFESDAWARDPAGGCGRLIVDLMDGIEQCRNEMEHV 120 6******************************************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MSSPAGDPNV PLDGSGSPQH HGSSCAACKH QHRRCTEECV LRPYFPDDDQ QQFANAHRVF 60 GYANITNMIE SVDPHRRHET MRSIMFESDA WARDPAGGCG RLIVDLMDGI EQCRNEMEHV 120 MFQLQTYRRQ RQEAVAAVER CFAPFQAVDN MMLDSAGAAG ELAGVRNPAG FAGFPAQEHY 180 QVASAPAQQY NHVAVAPAPA PALQLNSGIL EEGFEMPRRQ GSDEFHW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-32	LBD family protein