PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56516.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 160aa MW: 18268.9 Da PI: 8.3652

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.1	4.6e-36	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lr+kC++dC+lapyfp +q +f +v+++FGasn++++lk++p + r +a++s + eA +r++dPvyG++++i +lq+++++++ e+ ++++ PKA56516.1 17 RCAACKFLRKKCKEDCTLAPYFPPSQVYRFSCVRRIFGASNITRMLKQVPAHLRAQAADSFASEAYWRVQDPVYGCTAIIDHLQHEIQRAQIEIWQAQA 115 6********************************************************************************************999888 PP DUF260 100 e 100 + PKA56516.1 116 Q 116 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MSGSNIFLDS TINGRRRCAA CKFLRKKCKE DCTLAPYFPP SQVYRFSCVR RIFGASNITR 60 MLKQVPAHLR AQAADSFASE AYWRVQDPVY GCTAIIDHLQ HEIQRAQIEI WQAQAQLAFY 120 KAQANLINQP ARPNKDEAYW AIEDDAMLLP DLTSFPPDLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-38	LBD family protein