PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56538.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

WRKY

Protein Properties

Length: 385aa MW: 42583.4 Da PI: 6.1513

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.5e-31	9	66	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+C++++C+vkkkvers +++++ei+Y+g Hnh+k PKA56538.1 9 EDGYNWRKYGQKQVKGSEFPRSYYKCSHPSCQVKKKVERSC-EGHITEIIYKGVHNHSK 66 8**************************************.*************85 PP
2	WRKY	103.5	1.2e-32	181	239	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k++er+++d + v++tYeg+Hnhe PKA56538.1 181 VNDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHIERASSDLRSVITTYEGKHNHE 239 58********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MFSLDSPAED GYNWRKYGQK QVKGSEFPRS YYKCSHPSCQ VKKKVERSCE GHITEIIYKG 60 VHNHSKPEQN LKLNDNGTSD HVDPNQTASF ATGLYDQPDP IQAIVDLHID AQDGIDVSSN 120 LSNDDEQAAH VGMSRDHVAD GDEIVSKRRK LDVGELELSS ASRAIREPAV VIQMPSEVDI 180 VNDGYRWRKY GQKVVKGNPN PRSYYKCTNP GCTVRKHIER ASSDLRSVIT TYEGKHNHEV 240 PAVRNDNPPS LEALGLTTTS VPPSDIFQRK GEPAILPNSF NRFYDLQLGS LGAQGRNLHL 300 GAQGLDFCYG MGQHMPPNFA DILGNLESKK MLAIPPFPAY VPPLQHNGWS GGEVDFVLPK 360 EEPREEPSTD SEAPTSGGSS AIYQL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MFSLDSPAED GYNWRKYGQK QVKGSEFPRS YYKCSHPSCQ VKKKVERSCE GHITEIIYKG  60
VHNHSKPEQN LKLNDNGTSD HVDPNQTASF ATGLYDQPDP IQAIVDLHID AQDGIDVSSN  120
LSNDDEQAAH VGMSRDHVAD GDEIVSKRRK LDVGELELSS ASRAIREPAV VIQMPSEVDI  180
VNDGYRWRKY GQKVVKGNPN PRSYYKCTNP GCTVRKHIER ASSDLRSVIT TYEGKHNHEV  240
PAVRNDNPPS LEALGLTTTS VPPSDIFQRK GEPAILPNSF NRFYDLQLGS LGAQGRNLHL  300
GAQGLDFCYG MGQHMPPNFA DILGNLESKK MLAIPPFPAY VPPLQHNGWS GGEVDFVLPK  360
EEPREEPSTD SEAPTSGGSS AIYQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-86	WRKY family protein