PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56605.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 432aa MW: 47795.1 Da PI: 7.2925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.1e-12	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ PKA56605.1 52 PGEPDCIYYMRTGSCGYGSNCRYNHP 77 5789*********************9 PP
2	zf-CCCH	34.4	3.7e-11	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tG Ck+G++Ck++H++ PKA56605.1 96 QPDCQYFLKTGMCKFGSTCKYHHPR 120 789********************96 PP
3	zf-CCCH	37.9	2.9e-12	142	165	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ PKA56605.1 142 KSCPYYMRTGTCKFGVVCKFNHPQ 165 66********************97 PP
4	zf-CCCH	40.9	3.4e-13	284	309	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG++Ck++H++ PKA56605.1 284 DQPECQYYMKTGSCKYGSTCKYNHPR 309 689*********************96 PP
5	zf-CCCH	35.5	1.6e-11	328	353	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++ +G C+yG+ C+F H+ PKA56605.1 328 PGQPVCSFYSMYGSCRYGSACRFDHP 353 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MPDKREFLNN VVSASSNVSS ENHHLDDALQ RLKLEDYQEQ DDDHENLYPD RPGEPDCIYY 60 MRTGSCGYGS NCRYNHPTHN GQGTRARDEL PERVGQPDCQ YFLKTGMCKF GSTCKYHHPR 120 DRLDAQPVPL NVLGFPMRQD EKSCPYYMRT GTCKFGVVCK FNHPQPGTLG TVFSLTGSSA 180 YGSMASPVAP TSSVPLVGGV SAWPLSNRPL YLSSPHIQSV PSYMPVILPS SQGTMPLQQG 240 WTTYTGSASH VPSSDVLGPS QTPNLKNNVQ PSQTSLEHLP ERPDQPECQY YMKTGSCKYG 300 STCKYNHPRE RSPMAAGTLG PLGLPLRPGQ PVCSFYSMYG SCRYGSACRF DHPLVGYYNY 360 TVSTISIPDP STFFPSQRNT DAEWTSSDRR PLSKTTKSEA NGEDEREISP ARTSSPSRTA 420 PPPESSLKNH SD

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MPDKREFLNN VVSASSNVSS ENHHLDDALQ RLKLEDYQEQ DDDHENLYPD RPGEPDCIYY  60
MRTGSCGYGS NCRYNHPTHN GQGTRARDEL PERVGQPDCQ YFLKTGMCKF GSTCKYHHPR  120
DRLDAQPVPL NVLGFPMRQD EKSCPYYMRT GTCKFGVVCK FNHPQPGTLG TVFSLTGSSA  180
YGSMASPVAP TSSVPLVGGV SAWPLSNRPL YLSSPHIQSV PSYMPVILPS SQGTMPLQQG  240
WTTYTGSASH VPSSDVLGPS QTPNLKNNVQ PSQTSLEHLP ERPDQPECQY YMKTGSCKYG  300
STCKYNHPRE RSPMAAGTLG PLGLPLRPGQ PVCSFYSMYG SCRYGSACRF DHPLVGYYNY  360
TVSTISIPDP STFFPSQRNT DAEWTSSDRR PLSKTTKSEA NGEDEREISP ARTSSPSRTA  420
PPPESSLKNH SD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-88	C3H family protein