PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA56640.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family Whirly
Protein Properties Length: 232aa    MW: 25751.9 Da    PI: 9.9237
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA56640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly183.15.3e-57571931137
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s++k+kaal + +  + f+++dsg lk++r+G +ll++++a+++rkyd+ekkq falsatev++l+ l++ e+ceffhdp++k+s eG v+k+l v Pl
  PKA56640.1  57 SIFKGKAALVMTPLPARFSKMDSGGLKVDRKGVVLLKFMPAIGQRKYDYEKKQYFALSATEVGSLIGLGPTETCEFFHDPSMKSSLEGLVKKTLTVSPL 155
                 79************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  dG G+f+nlsv n ++k+ne++svPv+kaefav+r +
  PKA56640.1 156 GDGNGYFFNLSVLNAVQKTNERLSVPVTKAEFAVIRAA 193
                 ***********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MLSRLCPRSR NVVYAASFTE KFSYIRDALC SCNLIAQHRV STNTSEHSSG RAYADYSIFK  60
GKAALVMTPL PARFSKMDSG GLKVDRKGVV LLKFMPAIGQ RKYDYEKKQY FALSATEVGS  120
LIGLGPTETC EFFHDPSMKS SLEGLVKKTL TVSPLGDGNG YFFNLSVLNA VQKTNERLSV  180
PVTKAEFAVI RAACGFALPH MMGWSKVMQV QHPEHRGLLP GQRELKMVTD VW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-70Whirly family protein