PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56769.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

NAC

Protein Properties

Length: 384aa MW: 43392.3 Da PI: 8.8111

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yL++k+++k+l++ e i+++diyk+ePwdLpk+++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ PKA56769.1 14 MLPGFRFHPTDEELVGFYLRRKIQQKPLSI-ELIRQLDIYKYEPWDLPKMATTGEKEWYFYVPRDRKYRNSMRPNRVTSAGFWKATGTDRPIYSSeGTK 111 579*************************.89***********9888999**********************************996777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl PKA56769.1 112 SIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 8*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDEKNDVDKI DEIMLPGFRF HPTDEELVGF YLRRKIQQKP LSIELIRQLD IYKYEPWDLP 60 KMATTGEKEW YFYVPRDRKY RNSMRPNRVT SAGFWKATGT DRPIYSSEGT KSIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLNTTTIS KRPSDKNIIP VNESWAICRI FKKTTASSAQ 180 RAFSDSWSSS VSVTTNSDKH LIPPRTLSGG SFLGFENSTL CTTKIGSQIQ FGGNGGIEQR 240 SCAVIYPSLD VNTFKPNNMI INGKLSEVPS NSLLETPTDS RTSIDLASML PDLSPAMLQD 300 VDRSFSIIDF EHPQHSSFPL QINGNLGSEE DILAKKNVNT IIRTNSQLGK TVSFPFNLTP 360 NPSEEWKVNL PWDSTMCLSE MSTN

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDEKNDVDKI DEIMLPGFRF HPTDEELVGF YLRRKIQQKP LSIELIRQLD IYKYEPWDLP  60
KMATTGEKEW YFYVPRDRKY RNSMRPNRVT SAGFWKATGT DRPIYSSEGT KSIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLNTTTIS KRPSDKNIIP VNESWAICRI FKKTTASSAQ  180
RAFSDSWSSS VSVTTNSDKH LIPPRTLSGG SFLGFENSTL CTTKIGSQIQ FGGNGGIEQR  240
SCAVIYPSLD VNTFKPNNMI INGKLSEVPS NSLLETPTDS RTSIDLASML PDLSPAMLQD  300
VDRSFSIIDF EHPQHSSFPL QINGNLGSEE DILAKKNVNT IIRTNSQLGK TVSFPFNLTP  360
NPSEEWKVNL PWDSTMCLSE MSTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	3e-93	NAC family protein