PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56842.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 1699aa MW: 189436 Da PI: 7.9366

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	1601	1623	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + Lk+H +H PKA56842.1 1601 CTyeGCGKTFDQAAALKKHTHVH 1623 77779**************9887 PP
2	zf-C2H2	15.2	6.1e-05	1628	1652	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk F ++s LkrH H PKA56842.1 1628 YVCPieGCGKKFLDSSKLKRHNLIH 1652 99*******************8777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1699 aa Download sequence
MDALTLDKES WRENQENTME ILFGGEIRGL VGDGFDCLKE VRRICIDVLY GSRMGSLDQM 60 NASSEKTNFH EEEGSFREQL GDVNGESIVL IDPSSLKRSF RDCSPRVNSS YSKHLKSSPT 120 YPANVKENVN VLPNAHIDLV NHLPLRNAMS SWTADAVNPN QKFYTVETLG HDVTSNCYFG 180 SCQSMMGSSD NTYLASLLKN EQRNQGGSNH NGLIDATSST SPNSKATHGS LPSTPDRSLS 240 VRGVQNAFDC IDQGAQEVPS TMGFSANTAY FAVKDERSKE ANIQETVISS YSGMISVMKD 300 LKACCDCHAV NKPRYTDLKI LDSGSVSLVE QNSSVKCVSS CSITQALQSQ QSIEPCGPLS 360 GIIECSLEAS FSKNFIIRLR SLALQLLKDA GWSVEARNRK FDTERTDSYY KPPEGPVQSS 420 LSKAWMVCGL RLAASNPHAG ADSELGRVWT SIDAFCCELK NVLAFIKKEL HCLDVSSALL 480 CRWQLLDPFV AVVCIDKKVK ALRLGMVVKA VKSHASILSN SENLFLGSNE FDKFRCPYSD 540 GIQPILSVRR SELTGSSSSK QGSASHDSQF RKRKQRHRHL VPRVCQVAIT CSRNHESLLG 600 CSTEGYSVAE VAHGQGHILL PGSPANDVLC LQAMTPAGPS NLETANLKRK LGSCNIKGDI 660 IRKSLSFEEC DDLSSNDGAC KSTNVCNNAN RRNEQLNEMR QHRKTQGDLG SYCMLNSKHE 720 HPMTGQEIIL FSPQKNSICF SKDGYCRQEL CGHFISPYGL EATMKQELQS SIDQSCSMDI 780 VHHPCLAVES TNSTGFSTHG GIIRFDHQGD HCLVDKLSLE GILGRFQHIK DGTARSSKPA 840 MRKVTEEKPH SSSVKQIPKK SKKTTEVALV RKIAKKKVCN ENKVMGKVSK RMKKTPEINM 900 TTVNAMNLKS KLPVKRVFGQ CSTDDGLHCK TLQDEAFTMR GDSFAKGSNK SVFHEETIVA 960 SSNLDKEHAR FRETLDHYLD FGFGNSLNPY SDKMSAVTVS YGPHNKEKVW DMDKAKICKN 1020 RKRKNSYKIM KSSLQLLVND EISSLHAKSY DETPICDPHS TTGHDEADTI RLSKQRGRRK 1080 KLGCQIENHN LLIFAGIKSE DNNSFCKSFC RRGWNSELKA LGIPQTQKSD CEMVVRHARS 1140 NVKGSKGKKE ADTSSRTVLS WLVKMDVISV NDTIQCHNPR NNKVAKEGRV INGGILCNCC 1200 QKIFCVTKFR QHAGFRVQNP SLNLFLESGK PYILCQLQAW SAEYKLRKDA EKTMEVQDTD 1260 ENDDTCRHCG DGGELICCDG CPSSYHQACL YLKEISEGCW YCPNCTCSIC QCGLNLPQES 1320 GSFVTMECSQ CEQQYHEDCM KERIKCDAVG SNIWFCGQNC LEIYIGLRTI VGLTNKMSNG 1380 FSWTVLRCFH DDQKVHSAKK TALMAECNTK LAIALSIMEE SFLPMLDPST GHNMIPHILY 1440 NWGSNCLRMN YQGFYTVALE KEDEIISLAA IRVHGVTLAE MPLITTCSEH RHKGMCRRLV 1500 HVIEEILKSL KVEMLILPAV SSFVDSWISA FGFEPIDDND KQRLSTMCVI SFPGTILLKK 1560 KLYPSPENES EDMLNTIREK SREVELEEKR SEPATEMLFL CTYEGCGKTF DQAAALKKHT 1620 HVHGERQYVC PIEGCGKKFL DSSKLKRHNL IHTGEKNYKC PYEGCGLLIG LQLEGAYQNA 1680 FVGELSCLPL PRMRQKVYT

Sequence ? help Back to Top

Protein Sequence Length: 1699 aa Download sequence

MDALTLDKES WRENQENTME ILFGGEIRGL VGDGFDCLKE VRRICIDVLY GSRMGSLDQM  60
NASSEKTNFH EEEGSFREQL GDVNGESIVL IDPSSLKRSF RDCSPRVNSS YSKHLKSSPT  120
YPANVKENVN VLPNAHIDLV NHLPLRNAMS SWTADAVNPN QKFYTVETLG HDVTSNCYFG  180
SCQSMMGSSD NTYLASLLKN EQRNQGGSNH NGLIDATSST SPNSKATHGS LPSTPDRSLS  240
VRGVQNAFDC IDQGAQEVPS TMGFSANTAY FAVKDERSKE ANIQETVISS YSGMISVMKD  300
LKACCDCHAV NKPRYTDLKI LDSGSVSLVE QNSSVKCVSS CSITQALQSQ QSIEPCGPLS  360
GIIECSLEAS FSKNFIIRLR SLALQLLKDA GWSVEARNRK FDTERTDSYY KPPEGPVQSS  420
LSKAWMVCGL RLAASNPHAG ADSELGRVWT SIDAFCCELK NVLAFIKKEL HCLDVSSALL  480
CRWQLLDPFV AVVCIDKKVK ALRLGMVVKA VKSHASILSN SENLFLGSNE FDKFRCPYSD  540
GIQPILSVRR SELTGSSSSK QGSASHDSQF RKRKQRHRHL VPRVCQVAIT CSRNHESLLG  600
CSTEGYSVAE VAHGQGHILL PGSPANDVLC LQAMTPAGPS NLETANLKRK LGSCNIKGDI  660
IRKSLSFEEC DDLSSNDGAC KSTNVCNNAN RRNEQLNEMR QHRKTQGDLG SYCMLNSKHE  720
HPMTGQEIIL FSPQKNSICF SKDGYCRQEL CGHFISPYGL EATMKQELQS SIDQSCSMDI  780
VHHPCLAVES TNSTGFSTHG GIIRFDHQGD HCLVDKLSLE GILGRFQHIK DGTARSSKPA  840
MRKVTEEKPH SSSVKQIPKK SKKTTEVALV RKIAKKKVCN ENKVMGKVSK RMKKTPEINM  900
TTVNAMNLKS KLPVKRVFGQ CSTDDGLHCK TLQDEAFTMR GDSFAKGSNK SVFHEETIVA  960
SSNLDKEHAR FRETLDHYLD FGFGNSLNPY SDKMSAVTVS YGPHNKEKVW DMDKAKICKN  1020
RKRKNSYKIM KSSLQLLVND EISSLHAKSY DETPICDPHS TTGHDEADTI RLSKQRGRRK  1080
KLGCQIENHN LLIFAGIKSE DNNSFCKSFC RRGWNSELKA LGIPQTQKSD CEMVVRHARS  1140
NVKGSKGKKE ADTSSRTVLS WLVKMDVISV NDTIQCHNPR NNKVAKEGRV INGGILCNCC  1200
QKIFCVTKFR QHAGFRVQNP SLNLFLESGK PYILCQLQAW SAEYKLRKDA EKTMEVQDTD  1260
ENDDTCRHCG DGGELICCDG CPSSYHQACL YLKEISEGCW YCPNCTCSIC QCGLNLPQES  1320
GSFVTMECSQ CEQQYHEDCM KERIKCDAVG SNIWFCGQNC LEIYIGLRTI VGLTNKMSNG  1380
FSWTVLRCFH DDQKVHSAKK TALMAECNTK LAIALSIMEE SFLPMLDPST GHNMIPHILY  1440
NWGSNCLRMN YQGFYTVALE KEDEIISLAA IRVHGVTLAE MPLITTCSEH RHKGMCRRLV  1500
HVIEEILKSL KVEMLILPAV SSFVDSWISA FGFEPIDDND KQRLSTMCVI SFPGTILLKK  1560
KLYPSPENES EDMLNTIREK SREVELEEKR SEPATEMLFL CTYEGCGKTF DQAAALKKHT  1620
HVHGERQYVC PIEGCGKKFL DSSKLKRHNL IHTGEKNYKC PYEGCGLLIG LQLEGAYQNA  1680
FVGELSCLPL PRMRQKVYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-34	C2H2 family protein