PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56857.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 483aa MW: 53161.6 Da PI: 8.5933

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H PKA56857.1 108 YICEVCHKGFQRDQNLQLHRRGH 130 89*******************88 PP
2	zf-C2H2	11.9	0.00068	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + PKA56857.1 184 WKCDKCSKRYAVQSDWKAHSKIC 206 58*****************9876 PP
3	zf-C2H2	10.8	0.0015	214	232	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + PKA56857.1 214 DCGTIFSRKDSFVTHRAFC 232 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MGLAGLQSLI LDCLSILFRS SSLQLLSQLH LDIFRSSEET SSSSDMSNSS EEESQSMEAR 60 LPIMASKSDS SLVSSSTTKK KRNPPGNPDP DAEVVALSPR TLLATNRYIC EVCHKGFQRD 120 QNLQLHRRGH NLPWKLKQRS STEAKKRVYV CPEVTCAHHD PTRALGDLTG IKKHYSRKHG 180 EKKWKCDKCS KRYAVQSDWK AHSKICGTKE YRCDCGTIFS RKDSFVTHRA FCDALTEENN 240 RTNQEMLSQT MPSLGSSIMD ATMNISSSNV GANNPMKPLS LNAFMPLSSD VLYNHGTSRS 300 SAPQISGGQS SLSMSMGSSF MSATALLQKA AQMGAKVSDD STISPIIHRG FTGFSRPTSF 360 MQNTSPRHLE ASEVNSEAGN TSIMPSSSNG PHVGLQGSLQ MSSKWAPNPS DLRTNAFLPI 420 PIGGESKTTG DRKTYRMTQD FLGLGSADNV AVSTRGADAD YDEDGMYSYH QTHLEKQMWD 480 YYK

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MGLAGLQSLI LDCLSILFRS SSLQLLSQLH LDIFRSSEET SSSSDMSNSS EEESQSMEAR  60
LPIMASKSDS SLVSSSTTKK KRNPPGNPDP DAEVVALSPR TLLATNRYIC EVCHKGFQRD  120
QNLQLHRRGH NLPWKLKQRS STEAKKRVYV CPEVTCAHHD PTRALGDLTG IKKHYSRKHG  180
EKKWKCDKCS KRYAVQSDWK AHSKICGTKE YRCDCGTIFS RKDSFVTHRA FCDALTEENN  240
RTNQEMLSQT MPSLGSSIMD ATMNISSSNV GANNPMKPLS LNAFMPLSSD VLYNHGTSRS  300
SAPQISGGQS SLSMSMGSSF MSATALLQKA AQMGAKVSDD STISPIIHRG FTGFSRPTSF  360
MQNTSPRHLE ASEVNSEAGN TSIMPSSSNG PHVGLQGSLQ MSSKWAPNPS DLRTNAFLPI  420
PIGGESKTTG DRKTYRMTQD FLGLGSADNV AVSTRGADAD YDEDGMYSYH QTHLEKQMWD  480
YYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-106	C2H2 family protein