PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56880.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 642aa MW: 71608.6 Da PI: 7.325

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55	1.5e-17	7	71	33	99
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l+ +d++g W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + ++ el+v+v+r+ PKA56880.1 7 TQELVAKDLHGVDWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGENDELRVGVRRA 71 35899********************************************..3488889**996 PP
2	Auxin_resp	113.9	1.4e-37	96	178	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+seF+v+++k+++++k+++s G Rfkm+fe+e+++e+r++Gtvvgv d+d+ rW +S Wr+Lk PKA56880.1 96 AWHAVNTGTMFTVYYKPRTSPSEFIVPYDKYMESIKSNYSTGIRFKMRFEGEEAPEQRFAGTVVGVGDVDTNRWAGSSWRCLK 178 89*******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MDRQPPTQEL VAKDLHGVDW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE 60 NDELRVGVRR AMRQLPNVPP SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPSEFI 120 VPYDKYMESI KSNYSTGIRF KMRFEGEEAP EQRFAGTVVG VGDVDTNRWA GSSWRCLKVR 180 WDETSSISRP ERVSPWQIEP AMTPPPPNSL LVARSKRPRT NTNTVSVETS VLTNEVTSKV 240 HINASQGISR VLHGQESINF RTNCADVIEA EQAQKSSMRS SSHNEIGSFG SVHRLDSEGQ 300 SLGVRHGSSY GDLLFRTLGA SQALGSSLLD QKIDSKNLLR SNFQDPVTKQ CATSGTWSLI 360 NQSSASNLEL NLMPTHLGKP SNPELQTYGG SSSSIRHEFE QPTPNWFMHL LPTYKMENQT 420 QTRALTPQSC KSGDIEMVKH KETGNCKLFG VQLNSSPLIS ELPLPQAIAS HDLEVHCQPT 480 ASLQLSQNRE DCHIDFAKNL KPMDTASADT VKERDVICSW ASKEIHGKPL GSTTRSCTKV 540 HRQGSALGRS VDLSKLSNYE DLVAELDCMF DFKGELLSPT KHWLVVYTDD EGDMMLVGDD 600 PWGEFCNMVR KINIYTREEV QKMNPNSLNS SATESLAPSE DG

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MDRQPPTQEL VAKDLHGVDW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE  60
NDELRVGVRR AMRQLPNVPP SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPSEFI  120
VPYDKYMESI KSNYSTGIRF KMRFEGEEAP EQRFAGTVVG VGDVDTNRWA GSSWRCLKVR  180
WDETSSISRP ERVSPWQIEP AMTPPPPNSL LVARSKRPRT NTNTVSVETS VLTNEVTSKV  240
HINASQGISR VLHGQESINF RTNCADVIEA EQAQKSSMRS SSHNEIGSFG SVHRLDSEGQ  300
SLGVRHGSSY GDLLFRTLGA SQALGSSLLD QKIDSKNLLR SNFQDPVTKQ CATSGTWSLI  360
NQSSASNLEL NLMPTHLGKP SNPELQTYGG SSSSIRHEFE QPTPNWFMHL LPTYKMENQT  420
QTRALTPQSC KSGDIEMVKH KETGNCKLFG VQLNSSPLIS ELPLPQAIAS HDLEVHCQPT  480
ASLQLSQNRE DCHIDFAKNL KPMDTASADT VKERDVICSW ASKEIHGKPL GSTTRSCTKV  540
HRQGSALGRS VDLSKLSNYE DLVAELDCMF DFKGELLSPT KHWLVVYTDD EGDMMLVGDD  600
PWGEFCNMVR KINIYTREEV QKMNPNSLNS SATESLAPSE DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-126	ARF family protein