PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56936.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 323aa MW: 34555.7 Da PI: 4.4782

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	297	319	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H PKA56936.1 297 VCKSCSKTFNSDNALQSHTKAkH 319 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MEFWGVEVKP GQTVKCGPGD EKLLHLSQAS LGEVKKDKGS ENVPIFVNIN NQKLVIGNLS 60 GDSCAQIQYD LVFEKDFELS HGSKSTSIFF VGYKSIHPGY GSEDDFDDSD SEDELQVDQK 120 TNGKAVIKNE PSKPLNAVKP NVVKADGEPA KAKTQPGKPE KADKPKTEGK VEEDEDDDGD 180 DDDDDDDDEK MGAAMLDNDD DEDDDEDDED SDEDEDATPK AENEKKRPAA VAASKSPIPE 240 KKAKLVTPAE KQKPGGGDGK KGGHVATPHP AKAAGKTPAT GDKPKQQQTP KPAGSIVCKS 300 CSKTFNSDNA LQSHTKAKHG GAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	4e-28	C2H2 family protein