PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56987.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

YABBY

Protein Properties

Length: 173aa MW: 19410.1 Da PI: 8.4873

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	183.7	1e-56	8	148	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 +eq Cyv+CnfCntilav+vPs+ +++vvtvrCG+C++ll vn+ q l h ++++ + +++ s+s +++++++ PKA56987.1 8 PFPEQFCYVHCNFCNTILAVNVPSSNMLNVVTVRCGYCANLLCVNIGALLQNLIPYVH----------QKME----------SDRNCGSSSSAMYSMET 86 5689****************************************998877665554..........3332..........33445555555555554 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +p p i PP krqrvPsaynrfikeeiqrika+nP+ishreafsaaaknWahfP+ihfgl PKA56987.1 87 SQEK-LP---P-IPPPGKRQRVPSAYNRFIKEEIQRIKANNPEISHREAFSAAAKNWAHFPHIHFGL 148 4433.33...3.789************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MSTQIAQPFP EQFCYVHCNF CNTILAVNVP SSNMLNVVTV RCGYCANLLC VNIGALLQNL 60 IPYVHQKMES DRNCGSSSSA MYSMETSQEK LPPIPPPGKR QRVPSAYNRF IKEEIQRIKA 120 NNPEISHREA FSAAAKNWAH FPHIHFGLSS SLDGSKQQVK YDESHPSTRD PKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-60	YABBY family protein