PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA57007.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 841aa    MW: 93092.6 Da    PI: 6.6519
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA57007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-172077457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  PKA57007.1 20 YVRYTPEQVEALERVYSQCPKPSSLRRQQLIRESptlvNIEPKQIKVWFQNRRCREKQ 77
                6789**************************99988889******************97 PP
2START156.42.2e-491683752204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+r++g+v  +++++ve+l d+   W ++++++++l vi  g  g ++l ++++
  PKA57007.1 168 IAEETLAEFMSKATGTAIDWVQMVGMKPGPDSIGIIAVSHNCIGVAARVCGLVSLEPTKVVEILKDRL-TWYRDCRSIDVLTVIPAGngGNIELVYMQT 265
                 7899******************************************************8888888888.*****************999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf+ +Ry+ +l++g++vi+++S+++ +  p      ++vRae+lpSg+li+p+++g+s +++v+hvdl+++ ++++lr l+ s    ++
  PKA57007.1 266 YAPTTLASaRDFWLLRYTTRLEDGSLVICERSLTPSTGGPVgppANNFVRAEMLPSGCLIRPCDGGGSMIHIVDHVDLDASNVPEVLRTLYDSPESLAQ 364
                 **************************************9999999****************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  PKA57007.1 365 KMTIAALRHIR 375
                 ******99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MAVVVSGKEA RKLLTEAGKY VRYTPEQVEA LERVYSQCPK PSSLRRQQLI RESPTLVNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVHENGFMR  120
QQVHNATVPT TDTSCESVVT SGRHRQKRNP TSRHPPKDAN NPDCLLTIAE ETLAEFMSKA  180
TGTAIDWVQM VGMKPGPDSI GIIAVSHNCI GVAARVCGLV SLEPTKVVEI LKDRLTWYRD  240
CRSIDVLTVI PAGNGGNIEL VYMQTYAPTT LASARDFWLL RYTTRLEDGS LVICERSLTP  300
STGGPVGPPA NNFVRAEMLP SGCLIRPCDG GGSMIHIVDH VDLDASNVPE VLRTLYDSPE  360
SLAQKMTIAA LRHIRQIEQE TNGEIFFGGE RQPAALRIFS QRMSRGFNDA INGFADDGWS  420
LMGSDGLEDV TITVNSTPNK LLGSHSSFAM FSSLRGGIIC AKASMLLQNV APSLLVRFLQ  480
EHRSEWADCS ADAYSSALLR SSPYAIPAGF MGSHVTIPLG QTIKHDELLE VIRLESNCFS  540
QDDVLARNMY LLQLCCGVDE DAPGACAELV FAPIDESFAD DAFLLPSGFR VIPLDAKTVS  600
PATMQTLDLA STLEVGPSGF TRTKIDATSN RYKSRSVMTI AFQFAFENHL REEVVSIARQ  660
YVRNLVASVQ RVAMALSTAR LGAELGIKHS SGTPEAHTLV DWICQSYRFH TGMELLRTDS  720
QSADSLIKLL WHHSDAIMCC SLKAFPLFTF ANQAGLDMLE TTLVGLQDIA VEKILDDAGR  780
KAIYSEFPKM MHQGLAHLPA GVCISSMGRP AAYEQAVVWK VVDEEDNHHC VAFIFVNWYF  840
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein