PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57023.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 187aa MW: 19421 Da PI: 8.618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.3	5.4e-43	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+C++lrr+C++dCv+apyfpa++p+kfanvhk+FGasnv kll+++ +r+da+sslvyeA+ar+rdPvyG++g +++lq+q++ l+a+lal+++ PKA57023.1 24 PCAGCRLLRRRCSPDCVFAPYFPADEPHKFANVHKVFGASNVNKLLQEVAVAQRSDAASSLVYEANARLRDPVYGCAGAVSNLQRQIDILSAQLALARA 122 7**********************************************************************************************9987 PP DUF260 100 e 100 e PKA57023.1 123 E 123 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MAGEVRDVAG SKATVAGAGA GVSPCAGCRL LRRRCSPDCV FAPYFPADEP HKFANVHKVF 60 GASNVNKLLQ EVAVAQRSDA ASSLVYEANA RLRDPVYGCA GAVSNLQRQI DILSAQLALA 120 RAETLRLRLR LHHAAHLAGS SAAVQLSAGS ASSSAAAATA SDADGKQSFS PAMFMEPHSI 180 GQPMWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-50	LBD family protein