PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57200.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 194aa MW: 22900 Da PI: 4.9129

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.1	1e-22	13	62	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien ++rq tf kRr g++KKA EL vLCd++ ++++fss+gkly y PKA57200.1 13 KKIENPTQRQSTFYKRRDGLFKKARELAVLCDVDLLLLLFSSSGKLYHYH 62 68**********************************************96 PP
2	K-box	21.1	1.3e-08	83	172	8	97
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ e + ++e++ + + e L+re R ++ ++ e+ sl +Lq +e++Le +++k+R + +++++e+l + k+ q+e +L ++ PKA57200.1 83 KVLEDGSGDERREMEEVGRLCEALEREMRFMQVDEKEDYSLADLQMVERNLEAAINKVRGEMETKIHKEMEKLHDMVKQRQQEGYSLCEE 172 555556667788999999999**********************************************************99998888766 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MWVIMGRGRM EIKKIENPTQ RQSTFYKRRD GLFKKARELA VLCDVDLLLL LFSSSGKLYH 60 YHSPTVPNVQ ELIERYEKAV EKKVLEDGSG DERREMEEVG RLCEALEREM RFMQVDEKED 120 YSLADLQMVE RNLEAAINKV RGEMETKIHK EMEKLHDMVK QRQQEGYSLC EELSHGSQHE 180 EQESEELDLK LGFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	3e-21	MIKC_MADS family protein