PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57217.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 240aa MW: 26524.1 Da PI: 8.1036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l ++v+++G+g +W + +++ g++R++k+c++rw++yl PKA57217.1 14 RGPWSPEEDAALRRYVQLHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	43.2	8.9e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + k G++ W+ Ia++++ gRt++++k++w++ PKA57217.1 69 GGFTEEEDSIIFSLYKSIGSR-WSVIASKLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRRYVQ LHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDSIIF SLYKSIGSRW SVIASKLPGR TDNDVKNYWN TKLKKKIIAA 120 GETARPVTSL HYQPPSPASP APANPPRVKA EALLPALPDS TLCYAFEPYQ LPPELPHELP 180 ATAGSGEYLL SPAASDELFF FPGDPFLFED GYSYWSDLLG SFSASCSQQT LTALWANNYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-73	MYB family protein