PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57347.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 236aa MW: 26586.8 Da PI: 10.2002

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEde+lv +++ +Ggg+W++I++ g+ R++k+c++rw +yl PKA57347.1 14 KGTWSREEDERLVTYIRAHGGGCWRSIPKAAGLLRCGKSCRLRWINYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	68	111	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T eE+ ++++++ lG++ W+ Iar ++ gRt++++k++w++y PKA57347.1 68 GNFTSEEENVIIKLHAFLGNK-WSMIARQLP-GRTDNEIKNYWNTY 111 79*****************.*****.**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MGRQPCCQKV HINKGTWSRE EDERLVTYIR AHGGGCWRSI PKAAGLLRCG KSCRLRWINY 60 LRPDLKLGNF TSEEENVIIK LHAFLGNKWS MIARQLPGRT DNEIKNYWNT YIKRKLLQRG 120 IDPQTHNYPL TKSLPSTISS GRSFNALMME KNLVTKRGVP ASSSPTASTA AAGNIRNLNL 180 DLSMCPPNHL PPPPTEAPAR KKRLPAICLC YRLGFKSGEA CGCEALREVH RVVEYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34990.1	2e-76	MYB family protein