PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57474.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 452aa MW: 49331.5 Da PI: 8.1306

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.6e-10	59	85	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +CkF+H+p PKA57474.1 59 PGEPDCAYYLRTGLCRFGMTCKFNHPP 85 5789*********************97 PP
2	zf-CCCH	38.2	2.3e-12	103	128	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ PKA57474.1 103 GQPECQYYLKTGTCKFGPTCKFHHPK 128 5799********************96 PP
3	zf-CCCH	35.8	1.3e-11	150	173	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e+C +++rtG+Ck+G++CkF+H++ PKA57474.1 150 EECAYYLRTGQCKFGNTCKFHHPQ 173 79********************97 PP
4	zf-CCCH	38.2	2.4e-12	309	335	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ PKA57474.1 309 PGEPECQFYMKTGDCKFGAVCRFHHPR 335 5799*********************96 PP
5	zf-CCCH	36.2	9.8e-12	355	381	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ PKA57474.1 355 PGEPQCIFYSRYGICKFGPNCKFDHPM 381 57899********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MEFDEGGGMQ VPAPRPAAAA AGSEAPASSV TPPLDEESMW KMNLGAGERM DSGLYPERPG 60 EPDCAYYLRT GLCRFGMTCK FNHPPNRNLA LARMNGGYPE RGGQPECQYY LKTGTCKFGP 120 TCKFHHPKDR AGIIGRVQLN ILGYPLRPNE ECAYYLRTGQ CKFGNTCKFH HPQPSNATFS 180 LRGSSVYPSV TALTSPSQQS FAGGLANWPL SKASFIASPR WQGPSNYAQL VFPQGLVQVP 240 SWNAFPGQLG SASSPERQHQ NTGKSQLFGS SHQIETTAGS SASFSSIRLS SVNMEQYSLL 300 RDNVFPERPG EPECQFYMKT GDCKFGAVCR FHHPRERIIP APNCMLSPLG LPLRPGEPQC 360 IFYSRYGICK FGPNCKFDHP MASPMGLFAY SLSTSSSPDV PVVRRHFGSS SQPPALTLSS 420 EGSPEASSAN VRRLSYSDSR EMASGDENIE SE

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MEFDEGGGMQ VPAPRPAAAA AGSEAPASSV TPPLDEESMW KMNLGAGERM DSGLYPERPG  60
EPDCAYYLRT GLCRFGMTCK FNHPPNRNLA LARMNGGYPE RGGQPECQYY LKTGTCKFGP  120
TCKFHHPKDR AGIIGRVQLN ILGYPLRPNE ECAYYLRTGQ CKFGNTCKFH HPQPSNATFS  180
LRGSSVYPSV TALTSPSQQS FAGGLANWPL SKASFIASPR WQGPSNYAQL VFPQGLVQVP  240
SWNAFPGQLG SASSPERQHQ NTGKSQLFGS SHQIETTAGS SASFSSIRLS SVNMEQYSLL  300
RDNVFPERPG EPECQFYMKT GDCKFGAVCR FHHPRERIIP APNCMLSPLG LPLRPGEPQC  360
IFYSRYGICK FGPNCKFDHP MASPMGLFAY SLSTSSSPDV PVVRRHFGSS SQPPALTLSS  420
EGSPEASSAN VRRLSYSDSR EMASGDENIE SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	C3H family protein