PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57509.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 195aa MW: 23426 Da PI: 8.6092

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.2e-18	85	139	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ n+ ++ ++ eLA+kl+L rqV +WFqNrRa+ k PKA57509.1 85 RKKLRLTKEQSSFLEESFRANKMLTLVQKHELAEKLHLLPRQVEIWFQNRRARTK 139 788899***********************************************98 PP
2	HD-ZIP_I/II	105.2	5.3e-34	85	172	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq+++LEesF++++ L+ +K+ela++L+l prqv++WFqnrRARtk+kq+E+d e+Lk+++++l een+rL++e+++Lr PKA57509.1 85 RKKLRLTKEQSSFLEESFRANKMLTLVQKHELAEKLHLLPRQVEIWFQNRRARTKLKQTETDREFLKKWCESLGEENRRLRREMQQLR 172 69************************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MEENMCKIGL GLRIASCHQE MPPAKLHFLF PPCMKEEEKK ENDQKVLFKK ENTETTVQPK 60 KNDKHKNDKE EEEEEEEEEE KGGTRKKLRL TKEQSSFLEE SFRANKMLTL VQKHELAEKL 120 HLLPRQVEIW FQNRRARTKL KQTETDREFL KKWCESLGEE NRRLRREMQQ LRFHAEVDKI 180 KAMRVCPSCV KFMHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	TRKKLRL
2	134	142	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-36	HD-ZIP family protein