PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57588.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 278aa MW: 31247.3 Da PI: 6.6214

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl PKA57588.1 14 KGPWSPEEDGKLKAYIEEHGTGgNWIALPHKIGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.3	6.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ PKA57588.1 69 GGFSEEEDMIICNLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRAPCCDKA SVKKGPWSPE EDGKLKAYIE EHGTGGNWIA LPHKIGLNRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDMIIC NLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGS 120 SVPQLQEQYN GRVEQSSKTL SSSAMERLQL HMQLHGPQSS FSLYSNPALW PKPYTVYTNA 180 MATELSLREL LPKNAMAPIH ESPNVQSNFF SSSSSSSSSN LEGDLHDLLY DKDNVINLSE 240 LDCLKEMNEE AMGWWDSAAA PLQPNFMLQD YGQGFDLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-90	MYB family protein