PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57654.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 417aa MW: 44600.3 Da PI: 8.3221

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	46	72	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++e C +++rtG C +GdrC+++H++ PKA57654.1 46 PGEEDCAYYMRTGACGFGDRCRYNHPR 72 5899*********************96 PP
2	zf-CCCH	40.2	5.7e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC ++++tGtCk+G++Ck++H++ PKA57654.1 96 QPLCEYYMKTGTCKFGSSCKYHHPR 120 79*********************96 PP
3	zf-CCCH	39.3	1.1e-12	140	166	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG+Ck+G++CkF+H++ PKA57654.1 140 PGERECSYYLRTGQCKFGSTCKFHHPQ 166 5789*********************97 PP
4	zf-CCCH	40.8	3.6e-13	288	313	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++rtG Ck+G++Ck++H+ PKA57654.1 288 PGQPICQFYMRTGDCKFGSTCKYHHP 313 5789*********************9 PP
5	zf-CCCH	31.8	2.5e-10	337	360	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a+ G Ck+G++CkF H++ PKA57654.1 337 QICAYYAQHGVCKFGPTCKFDHPM 360 58********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MEPHGRNPAR EGPSADPTAG FEESMRRLGL GGGSGSGASF PYPERPGEED CAYYMRTGAC 60 GFGDRCRYNH PRDRGGMPVG GAFQPVAGVY PERVGQPLCE YYMKTGTCKF GSSCKYHHPR 120 EGVGTLQPVS LSYYGYPLRP GERECSYYLR TGQCKFGSTC KFHHPQPIGA SVPSAAPVFY 180 PAVQPPSTPS PQQIPQVGGW QIGKSGPYGP MVLSAGVVPV PGWSPYLTPL GQAISPGMQQ 240 SVAAVSQSGA GTQLSPPAPT YAVSYSPFSS SVGPSISAQK EHLFSQRPGQ PICQFYMRTG 300 DCKFGSTCKY HHPLDWSMPI TNCLLSPLGL PLRPGAQICA YYAQHGVCKF GPTCKFDHPM 360 GTLSYSSSAS SLLDMPVAPY PIGFSQPTLA PSSSSSELRP NFFSSKDAFS TQTFSSE

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MEPHGRNPAR EGPSADPTAG FEESMRRLGL GGGSGSGASF PYPERPGEED CAYYMRTGAC  60
GFGDRCRYNH PRDRGGMPVG GAFQPVAGVY PERVGQPLCE YYMKTGTCKF GSSCKYHHPR  120
EGVGTLQPVS LSYYGYPLRP GERECSYYLR TGQCKFGSTC KFHHPQPIGA SVPSAAPVFY  180
PAVQPPSTPS PQQIPQVGGW QIGKSGPYGP MVLSAGVVPV PGWSPYLTPL GQAISPGMQQ  240
SVAAVSQSGA GTQLSPPAPT YAVSYSPFSS SVGPSISAQK EHLFSQRPGQ PICQFYMRTG  300
DCKFGSTCKY HHPLDWSMPI TNCLLSPLGL PLRPGAQICA YYAQHGVCKF GPTCKFDHPM  360
GTLSYSSSAS SLLDMPVAPY PIGFSQPTLA PSSSSSELRP NFFSSKDAFS TQTFSSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-115	C3H family protein