PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA57828.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 389aa MW: 42347.7 Da PI: 7.051

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA57828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	86	162	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe+hsk+p vlv+g eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ PKA57828.1 86 CLVDGCKSDLSNCREYHRRHKVCEIHSKTPIVLVAGNEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 162 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEWDLKMPPW VAPEMEQNAD EANLSSVVSG RQPGALDCSV DLKLGGLGEV WKEQTKASPA 60 PAPAAPAPGS LKRHRVATSS SHNVSCLVDG CKSDLSNCRE YHRRHKVCEI HSKTPIVLVA 120 GNEQRFCQQC SRFHLLVEFD EVKRSCRKRL DGHNRRRRKP QPESISSSNL FLNLHGSRFT 180 SCPPMFPAAA TGTTAWNTAI KTEEDALYAH RQPPLHIFDG PHSPRMPHFT DSLDLTFKES 240 KQLPFLHECG PDSTTVLEPA AVCQQLLNTV SSAAESRAGK AMFSDRLPPV LGSDCALSLL 300 SSTNHMVPVD RIPLSHQPVI TSLQYNTSQV ASNNISPTCF SCSGIDGNRV GAVLVSDGID 360 SGIHCQSIFQ VGGEGSSDEA SQALSFAWQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEWDLKMPPW VAPEMEQNAD EANLSSVVSG RQPGALDCSV DLKLGGLGEV WKEQTKASPA  60
PAPAAPAPGS LKRHRVATSS SHNVSCLVDG CKSDLSNCRE YHRRHKVCEI HSKTPIVLVA  120
GNEQRFCQQC SRFHLLVEFD EVKRSCRKRL DGHNRRRRKP QPESISSSNL FLNLHGSRFT  180
SCPPMFPAAA TGTTAWNTAI KTEEDALYAH RQPPLHIFDG PHSPRMPHFT DSLDLTFKES  240
KQLPFLHECG PDSTTVLEPA AVCQQLLNTV SSAAESRAGK AMFSDRLPPV LGSDCALSLL  300
SSTNHMVPVD RIPLSHQPVI TSLQYNTSQV ASNNISPTCF SCSGIDGNRV GAVLVSDGID  360
SGIHCQSIFQ VGGEGSSDEA SQALSFAWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	160	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-47	SBP family protein