PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58188.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 107aa MW: 12590.4 Da PI: 10.6358

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	5	58	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F k+r++ ++ +LA+++gL+ +qV vWFqNrRa++k PKA58188.1 5 KKRRLSDEQVKFLEINFGKERKLESGRKVHLATEIGLDPKQVAVWFQNRRARWK 58 56689************************************************9 PP
2	HD-ZIP_I/II	117.8	5.9e-38	5	87	2	84
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkrrls+eqvk+LE +F +e+kLe+ rKv+la+e+gl+p+qvavWFqnrRAR+k+kqlE++y +L++++d++ e++rLe+ev PKA58188.1 5 KKRRLSDEQVKFLEINFGKERKLESGRKVHLATEIGLDPKQVAVWFQNRRARWKSKQLEEEYVRLRSSHDSVLLEKCRLENEV 87 9*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence
MGEGKKRRLS DEQVKFLEIN FGKERKLESG RKVHLATEIG LDPKQVAVWF QNRRARWKSK 60 QLEEEYVRLR SSHDSVLLEK CRLENEVSFP PTRSPNPNLD LNRMGAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	61	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-37	HD-ZIP family protein