PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58230.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 234aa MW: 26322.3 Da PI: 5.5702

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	5	33	20	48
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G g+W+ +ar g+ R++k+c++rw +yl PKA58230.1 5 GQGCWSDVARNAGLQRCGKSCRLRWINYL 33 7889***********************97 PP
2	Myb_DNA-binding	52.7	9.8e-17	39	82	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ lG++ W+ Ia++++ gRt++++k++w++ PKA58230.1 39 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 82 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MLSNGQGCWS DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSILGNR 60 WSQIAARLPG RTDNEIKNFW NSTIKKRLKN STSPPSPPTS LGQIPTMNND HANELIMAAM 120 HMDSTSSSSS SSMQIFPMNN PYDFFPFPSL EDHHNPTTAD YKYQNPSKIL SNNINININD 180 NESNKGIIST ANGDLVESGN YWERHEGMGV GEWALEDLMG DVSSSFPFLD FEVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	8e-59	MYB family protein