PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58233.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 649aa MW: 70651.5 Da PI: 6.6823

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.1e-07	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PKA58233.1 262 PCPDFRK-GACRRGDMCEYAHG 282 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MNHLTIETDD IFASVLELAA NNDVDCFKRF VDGDPSAIDE VGDWYGRRKV IEKRTPLMVA 60 ATYGSIDVLK LIITLSSADV NRYCGADRTT ALHCAASGGS SNAVDAVKIL LAAGADPNCE 120 DASGHRPADV IIVPHKSSSM RFALEELLRS SNGPEAQNHH SILRVSTRCY PNCPSEEDIS 180 PSSDSTLSPN IGKPEKKEYP VDPSLPDIKN SIYSTDEFRM FSFKVRPCSR AYSHDWTECP 240 FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD 300 GTNCARRVCF FAHTNEELRP LFMSTGSAVP SPRSSVSAAM DMAAAMGLMP GSPSSVSAVM 360 SPFTPPMSPS SNGISHSSLN WPQSNVPALH LPGNNLQSSR LRSSVSSRDM PIDDYSLMQE 420 FEAQQLLNDI CISRLGSAGS RASLSKTLNP PSNLDDMLAA EIASSPSYKT AILNQFQQQH 480 QNLLSPINTS IYSPQSSLVK SSPGMISPRS IDPVSPMNSR LAALAHREKL QQTLRSLSSR 540 DLGAGASAIV GSPVSSSSLS KWVSPSRMPD WGVNREELGR LKRSSSFELH PGCEEPDVSW 600 VHSLVKESPP EKPASAEKSS VGPSLAPAEA PDDPIGAWME QLKLDQTVA

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MNHLTIETDD IFASVLELAA NNDVDCFKRF VDGDPSAIDE VGDWYGRRKV IEKRTPLMVA  60
ATYGSIDVLK LIITLSSADV NRYCGADRTT ALHCAASGGS SNAVDAVKIL LAAGADPNCE  120
DASGHRPADV IIVPHKSSSM RFALEELLRS SNGPEAQNHH SILRVSTRCY PNCPSEEDIS  180
PSSDSTLSPN IGKPEKKEYP VDPSLPDIKN SIYSTDEFRM FSFKVRPCSR AYSHDWTECP  240
FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD  300
GTNCARRVCF FAHTNEELRP LFMSTGSAVP SPRSSVSAAM DMAAAMGLMP GSPSSVSAVM  360
SPFTPPMSPS SNGISHSSLN WPQSNVPALH LPGNNLQSSR LRSSVSSRDM PIDDYSLMQE  420
FEAQQLLNDI CISRLGSAGS RASLSKTLNP PSNLDDMLAA EIASSPSYKT AILNQFQQQH  480
QNLLSPINTS IYSPQSSLVK SSPGMISPRS IDPVSPMNSR LAALAHREKL QQTLRSLSSR  540
DLGAGASAIV GSPVSSSSLS KWVSPSRMPD WGVNREELGR LKRSSSFELH PGCEEPDVSW  600
VHSLVKESPP EKPASAEKSS VGPSLAPAEA PDDPIGAWME QLKLDQTVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein