PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58280.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GATA
Protein Properties Length: 230aa    MW: 25998.3 Da    PI: 9.0296
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.58e-18159193135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  PKA58280.1 159 CSHCLSQKTPQWRAGPMGPKTLCNACGVRFKSGRL 193
                 *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MDVHRNAAVS GDSSEDLQPV RVPSPERALW EDLFWEQNKE GDDDNISLQW LSIFMEDCLS  60
GSANFTSSTP LTPTEENAKN PMASPGKPAM PRTKRRKNNP NAEFLNSPSE SPLLHQTHWL  120
AESELITVPN MEKGEEIRSP LRRKLNGKDE QKQQQPRRCS HCLSQKTPQW RAGPMGPKTL  180
CNACGVRFKS GRLLPEYRPA KSPTFVSYKH SNSHKKVMEM RMAVLSSNSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.16e-42GATA family protein