PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58461.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 399aa MW: 43142.7 Da PI: 8.5792

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	41	67	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG C yG+rC+F+H++ PKA58461.1 41 PGVPDCAYYMRTGACGYGERCRFNHPR 67 5789*********************96 PP
2	zf-CCCH	38.4	2e-12	86	110	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ PKA58461.1 86 QPVCEYYMKTGTCKFGSSCKYHHPR 110 689********************96 PP
3	zf-CCCH	40.5	4.5e-13	130	156	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G++CkF H++ PKA58461.1 130 PGERECSYYMKTGQCKFGPTCKFDHPQ 156 5789*********************97 PP
4	zf-CCCH	39.2	1.2e-12	274	300	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++Ck++H++ PKA58461.1 274 PGQPECQFYMRTGDCKFGASCKYHHPR 300 5789*********************96 PP
5	zf-CCCH	32.2	1.9e-10	323	345	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C +++r G Ck+G++CkF H+ PKA58461.1 323 QICAYYSRHGVCKFGPTCKFDHP 345 58********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MDAYGQVPRQ DLDTGLEESM WRLGLAGGSG GGADFSYPER PGVPDCAYYM RTGACGYGER 60 CRFNHPRDRG IAQFAGAGEY PERAGQPVCE YYMKTGTCKF GSSCKYHHPR HEGGSARPVL 120 LNYYGYPLRP GERECSYYMK TGQCKFGPTC KFDHPQPANA SMPSSASIYF SAVQPSSISS 180 SQQYPSSGSW QVGRPSAMLS GAYVPSSYGP MVLSPGVVPV PGWGAYPSPL SPGAQQTAQV 240 GSLYGPPTQL SPSAPAYARP SIGSQRESTL PERPGQPECQ FYMRTGDCKF GASCKYHHPR 300 DWSMPMTNCM LSRLGLPLRP GAQICAYYSR HGVCKFGPTC KFDHPVRTLS YGPLPPPVEM 360 PAAPYPIEIS LPTIIASSSS TQISAASSSR TKREMPSST

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MDAYGQVPRQ DLDTGLEESM WRLGLAGGSG GGADFSYPER PGVPDCAYYM RTGACGYGER  60
CRFNHPRDRG IAQFAGAGEY PERAGQPVCE YYMKTGTCKF GSSCKYHHPR HEGGSARPVL  120
LNYYGYPLRP GERECSYYMK TGQCKFGPTC KFDHPQPANA SMPSSASIYF SAVQPSSISS  180
SQQYPSSGSW QVGRPSAMLS GAYVPSSYGP MVLSPGVVPV PGWGAYPSPL SPGAQQTAQV  240
GSLYGPPTQL SPSAPAYARP SIGSQRESTL PERPGQPECQ FYMRTGDCKF GASCKYHHPR  300
DWSMPMTNCM LSRLGLPLRP GAQICAYYSR HGVCKFGPTC KFDHPVRTLS YGPLPPPVEM  360
PAAPYPIEIS LPTIIASSSS TQISAASSSR TKREMPSST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-127	C3H family protein