PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58780.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 250aa MW: 28488 Da PI: 8.9412

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++++ +G g +W + +++ g++R++k+c++rw++yl PKA58780.1 14 KGPWSPEEDDKLKQYIETHGIGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79****************999**********************97 PP
2	Myb_DNA-binding	43.9	5.7e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++ PKA58780.1 69 GNFSEEEDRIICSLFAAIGSR-WSIIASHLP-GRTDNDIKNYWNT 111 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDDKLKQYIE THGIGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGN FSEEEDRIIC SLFAAIGSRW SIIASHLPGR TDNDIKNYWN TKLKKKIFGF 120 SSPSQRKLHH HHHQQQQQQI KHHEQLQLPS NPDSLIETQQ HQHFPSIYPS QHHHCQIKEN 180 YGNLLAFGGS QQKYYSSSTE ISFGGNTEFE PETFGSYSGG ILGGGAPLIK SSVLEGIMQV 240 INTENTIYYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-75	MYB family protein