PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA58789.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family LBD
Protein Properties Length: 163aa    MW: 17962.3 Da    PI: 7.4673
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA58789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.8e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrr+C+++C++apyf +e+ +++fa++hk+FGasn +kll+a+p  +r +a+ ++ yeA+ar++dPvyG+v++i++lq+q+++l+a+l++++
  PKA58789.1   7 PCGACKFLRRRCPPNCIFAPYFGSENdAARFAVIHKVFGASNTSKLLSAIPAGDRCEAAVTISYEAQARLQDPVYGCVAHIFALQRQVASLQAQLVQAR 105
                 7*********************876659********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  PKA58789.1 106 TQ 107
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MAGAGSPCGA CKFLRRRCPP NCIFAPYFGS ENDAARFAVI HKVFGASNTS KLLSAIPAGD  60
RCEAAVTISY EAQARLQDPV YGCVAHIFAL QRQVASLQAQ LVQARTQLAH LDRRQQWLGF  120
APNYHFMEED GSQRQQAMII ESDADHPHDD PSTIISWSSQ VLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-47LBD family protein