PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA58852.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 237aa MW: 26590.1 Da PI: 6.513

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA58852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	2	44	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEd llv ++++G g+W++ +++ g+ R++k+c++rw +yl PKA58852.1 2 PEEDMLLVAHIRKHGHGNWRALPKRAGLLRCGKSCRLRWVNYL 44 7************************99**********97 PP
2	Myb_DNA-binding	52.4	1.2e-16	50	95	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++++lG++ W++Ia++++ gRt++++k+ w+++l PKA58852.1 50 RGNFTKEEEATVINLHQLLGNK-WSKIASYLP-GRTDNEIKNVWNTHL 95 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MPEEDMLLVA HIRKHGHGNW RALPKRAGLL RCGKSCRLRW VNYLRPDIKR GNFTKEEEAT 60 VINLHQLLGN KWSKIASYLP GRTDNEIKNV WNTHLKKRLK PKVPTRLPAP STDHNPPSSP 120 SSGTTSVSLS SEVFSIDKIE IPVEAQFDIN WNTIDEDLLN ACIEPEIQSG GGNSGDGLCE 180 DNRRWLACLE EELGLFGGAG IGEEVAEIMV TEGGDPARSY FLRRPYLKGQ EEEPYKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	5e-56	MYB family protein