PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA59023.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 354aa    MW: 38560.7 Da    PI: 6.9652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA59023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.2e-08131152426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+ f++ G C+ Gd C FaHg
  PKA59023.1 131 VACPEFRK-GSCRKGDACEFAHG 152
                 68******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MMMMTGEGIH RNPTVEVPPW SLLDDEDLLA GYQLPLSGIA GGSAGDYLLN EAVLAALQRY  60
LPSNESPESD ESADLADPPV DVYSCDEFRM YEFKVRRCAR GRAHDWTECP YAHPGEKARR  120
RDPRKFHYSG VACPEFRKGS CRKGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF  180
FAHTPEQLRV LPQQQLSPRT PESYDGSPLR HHALDAYFSK GVISPPMSPP ADSPPISPSG  240
AGIRRAAFPV GSPVNEVLAS LRKLQLSKVK SMPCSLGGLP AGSFTSLPAT PTGSVATRVL  300
DFEVGGPVER VESGRALRAK MYEKLSNDAG LDQFDAGVAA AAAPDVGWVS ELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-106C3H family protein