PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59131.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 306aa MW: 33631.8 Da PI: 4.9148

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.4e-07	19	61	6	42
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ + + + + +C+ + +lC C + H H++vp+ PKA59131.1 19 CDSCRSAPCSVYCRADAAYLCGGCDAAVHAAnslarrHRRVPV 61 *****************************65788999999986 PP
2	CCT	65.7	1.3e-22	234	277	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk RkFeK irY+sRKa+Ae+RpR+KGrF+k++ PKA59131.1 234 REARVLRYREKRKMRKFEKIIRYASRKAYAETRPRIKGRFAKRT 277 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MLKAEGDATA GARAAASWCD SCRSAPCSVY CRADAAYLCG GCDAAVHAAN SLARRHRRVP 60 VAPIPAGGLV VGFNAAFHQF LRRPEEAGAV MEDPEEDDDG FFAGGEVEDY LDLIDFSSCE 120 DDQSGETKGE MIAYGCEMEE GIDGVVPVRR TVEGDDHDQQ QCFQMIYEDM KVGFEGSPAL 180 SHQNISVSSM EGASIPEATM IGISSSQIWP SKGTIDLFSG PPAQTPQQFT PRDREARVLR 240 YREKRKMRKF EKIIRYASRK AYAETRPRIK GRFAKRTTNI ELQVNQMFAA PVNVMVETSY 300 GVVPSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	248	REKRKMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	4e-66	CO-like family protein