PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59235.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 193aa MW: 21324.7 Da PI: 11.7579

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	50.8	6.6e-16	18	64	2	59
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpai 59 ++kk + +++h+kv+gR+RR+R L++eLG+++d++tieWLl+qa+pa PKA59235.1 18 PVKKPSAKDRHSKVDGRGRRIR-----------LTRELGHKSDGQTIEWLLRQAEPAL 64 789*****************...........59*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence
MADTGGGAAA ASRTLPPPVK KPSAKDRHSK VDGRGRRIRL TRELGHKSDG QTIEWLLRQA 60 EPALHLLDRI FCAGPLHSGK APPHRRRSRR QGGRRRRRLG SRDWAGGFLG DAWADRIRAD 120 LELRCAGDGL PACRSWRGCV ATSLLSRATL IFLPLCLGRC RPPLPMEGAR RNLSDVSLLG 180 FVDDIWGFFC FVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	99	RRRSRRQGGRRRRRL
2	86	100	RRRSRRQGGRRRRRL
3	94	102	RRRRRLGSR
4	95	103	RRRRRLGSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-21	TCP family protein