PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59281.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 229aa MW: 23865.1 Da PI: 8.7411

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrrkC++dC+++pyf a+qp+kf vh++FGasnv kll++l++++reda++sl+yeAe+r+rdPvyG+vgvi+ lq++l+ql+ +l+++++ PKA59281.1 33 PCAGCKFLRRKCQPDCIFSPYFHADQPHKFISVHRVFGASNVAKLLAELRPDQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQRDLRQLQLQLSYARA 131 7**********************************************************************************************9988 PP DUF260 100 e 100 e PKA59281.1 132 E 132 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MTSSSASSVS RHPAASNPSF PPATTVLSIG SSPCAGCKFL RRKCQPDCIF SPYFHADQPH 60 KFISVHRVFG ASNVAKLLAE LRPDQREDAV NSLAYEAEMR LRDPVYGCVG VISLLQRDLR 120 QLQLQLSYAR AELARYHSAA AAAAAAAGSH QFVNINAGVL GAVAADHHLG FLRGQEGAQM 180 AARLAVNAAA YEAAPVINGT VNSASVAAGL GLLGGQLMRP SAAGGDANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	2e-49	LBD family protein