PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59379.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 260aa MW: 27186.3 Da PI: 7.7297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PKA59379.1 84 YKCKTCSKCFPSFQALGGHRASH 106 9***********99999998887 PP
2	zf-C2H2	13.9	0.00016	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PKA59379.1 160 HECSICGSEFSSGQALGGHMRRH 182 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MEETPGPNQP ADECLAVIAR RKRTKSVPTQ PPSSSSSSEF SSCATTEEEE DMANCLILLA 60 QGRSAAPSGK FTTRTSGKAG FYVYKCKTCS KCFPSFQALG GHRASHKKPK FSPAPAPAPP 120 TIDEDSIQLS INSFSEPPDP APAAAAGSGG GSGSGKQKVH ECSICGSEFS SGQALGGHMR 180 RHRPSNIAEQ PPEARKEKSP LSLDLNLPAP SDEDHHHQSG GGELRRPLSS VSAGPPTAFA 240 FSTKAQLILP SASALVDCPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-38	C2H2 family protein