PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA59503.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25945.4 Da    PI: 6.8018
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA59503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i+n + rqvtfskRr g++KKA+ELS+LCdaev +iifsstgkl+ yss
  PKA59503.1 10 KIDNATARQVTFSKRRRGLFKKAQELSILCDAEVGLIIFSSTGKLFQYSS 59
                69**********************************************96 PP
2K-box57.55.9e-20941732099
       K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + a+L k+  +L  ++R++ Ged+++L+++eLq++e+ Le +l+++ +kKn+ ++eqi++lq+k  +l een +Lr++l+
  PKA59503.1  94 DTARLSKQAAELSVQLRNMRGEDIDKLTVEELQKIESSLELGLNRVMEKKNQQIIEQINDLQQKGVKLMEENARLRHRLM 173
                 6799************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAQELSILCD AEVGLIIFSS TGKLFQYSSS  60
SMKDVIERRG LHSKNIQQNP DYPSIDLQLD GNADTARLSK QAAELSVQLR NMRGEDIDKL  120
TVEELQKIES SLELGLNRVM EKKNQQIIEQ INDLQQKGVK LMEENARLRH RLMDLKVGMA  180
WAGRSATNDS ENAENTVFED GQSSECISDI SHLGGPQELN ENDNISLKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-81MIKC_MADS family protein