PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA59825.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 334aa    MW: 36953.4 Da    PI: 5.4661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA59825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.22.7e-174998255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h++ E+rRR++iN++f+ Lr llP++    ++K +Ka+ L +++eYI+ Lq
  PKA59825.1 49 RSKHSATEQRRRSKINDRFQILRGLLPNS----DQKRDKASFLLEVIEYIRFLQ 98
                889*************************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MDSASRSSKV LEDDDDDDEE FGKGDGSSLK GLAVKCGGRN SDHKANTPRS KHSATEQRRR  60
SKINDRFQIL RGLLPNSDQK RDKASFLLEV IEYIRFLQEK VEKYESMYPG WSDESAKMMS  120
WEQNNHRITG DVMADVPVMK NGSAPGFIIS DNGVPVSPVI LSAAQNPIES DLLAGRGAGL  180
CQPQQTFISE SHHVGHRSSW LRTSSPADCT ISNNTSNEYE ELTIDEGTIN ISCAYSQGLL  240
NNMSEALQNS GINLSQASIS VQINLGKKAK NRIPNVSASM SLAKDVKDAY VMVSIVMYCR  300
DVRKWSTGEI LVDCFNMVGD ESVLWIGWKY GEVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-61bHLH family protein