PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA59918.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 24295.5 Da PI: 6.6868

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA59918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	53	107	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F k+r++ ++ +LA+++gL+ +qV vWFqNrRa++k+ PKA59918.1 53 KKRRLSDEQVKFLEMNFGKERKLESGRKLHLATEIGLDPKQVAVWFQNRRARWKN 107 45689************************************************95 PP
2	HD-ZIP_I/II	118	5.2e-38	53	143	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqvk+LE++F +e+kLe+ rK +la+e+gl+p+qvavWFqnrRAR+k+kqlE++y++L++++da e++rLe+ev +L+++l PKA59918.1 53 KKRRLSDEQVKFLEMNFGKERKLESGRKLHLATEIGLDPKQVAVWFQNRRARWKNKQLEEEYHHLRSSHDAALIEKCRLENEVLKLEDKLF 143 9*************************************************************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MAAAMKSMEE DEPLLSSLVS SGLISQMPQG EAKTRRLRKK AKSVGGGEAE DAKKRRLSDE 60 QVKFLEMNFG KERKLESGRK LHLATEIGLD PKQVAVWFQN RRARWKNKQL EEEYHHLRSS 120 HDAALIEKCR LENEVLKLED KLFQAEQEIK RLTCSTAAAI AGDADAGSPN SSLTTATHLG 180 EFGLQEGDGI YTTAAAAAAA VAYGDSYYYM MELGYLYGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	43	LRKKAKS
2	38	56	RKKAKSVGGGEAEDAKKRR
3	101	109	RRARWKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-46	HD-ZIP family protein