PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60025.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 630aa MW: 69043.7 Da PI: 5.7605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	452	497	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PKA60025.1 452 NHVEAERMRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYIQDL 497 799*********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence
MNLWSQEKAS LMEAFMATTD PQSLPWTQAP PAASAAVPGY FTQETLQQRL QILIEGARQS 60 WAYAIFWQSS MDVSPGISIL GWGDGYYKGC EDGKTKQKNS SPVSATEQER RKRVLRELNS 120 LITGSAAGSS PEDAVEEEVT DIEWFFLVSM TQSFVSGVGI PGQAFVSGNP SWIAGSDQLA 180 MAACDRARQA QSLGIQSLVC VPVGTGVVEL GSTELIFQSP ETMNQIRVLF DFNCLQTAAD 240 AAGSWMQPLP ISPPAMCQVD ADLSAQWISD PYMMVIRNSV SPSIAEPQIQ SGNLSVRSQQ 300 PPGPPPFSTR DFNFSNFELN NAAPHRFSKP ESGQNLHFGE INWNPSIVQA KQQALHENDR 360 NKKSAGSPAS RGSNEEGILS FSSAGGGGRK LFSADNGSAK LFSADDGGAV DSDHSDLEAS 420 VRETESSRVI EPEKRPRKRG RKPANGRLEP LNHVEAERMR REKLNQRFYS LRAVVPNVSK 480 MDKASLLGDA ISYIQDLRSK LDALEIDKEG LQTELEALKK EHLEAAPPPA FSRKMKADGR 540 SSGVEIDVKI MGGDAMIWMQ SLRKNHPAAR LMAALKELGL EVYHANLSVV KEMMVQQATV 600 KISSREYTEE QIRTSLLSRV ATDPRQEHGR

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence

MNLWSQEKAS LMEAFMATTD PQSLPWTQAP PAASAAVPGY FTQETLQQRL QILIEGARQS  60
WAYAIFWQSS MDVSPGISIL GWGDGYYKGC EDGKTKQKNS SPVSATEQER RKRVLRELNS  120
LITGSAAGSS PEDAVEEEVT DIEWFFLVSM TQSFVSGVGI PGQAFVSGNP SWIAGSDQLA  180
MAACDRARQA QSLGIQSLVC VPVGTGVVEL GSTELIFQSP ETMNQIRVLF DFNCLQTAAD  240
AAGSWMQPLP ISPPAMCQVD ADLSAQWISD PYMMVIRNSV SPSIAEPQIQ SGNLSVRSQQ  300
PPGPPPFSTR DFNFSNFELN NAAPHRFSKP ESGQNLHFGE INWNPSIVQA KQQALHENDR  360
NKKSAGSPAS RGSNEEGILS FSSAGGGGRK LFSADNGSAK LFSADDGGAV DSDHSDLEAS  420
VRETESSRVI EPEKRPRKRG RKPANGRLEP LNHVEAERMR REKLNQRFYS LRAVVPNVSK  480
MDKASLLGDA ISYIQDLRSK LDALEIDKEG LQTELEALKK EHLEAAPPPA FSRKMKADGR  540
SSGVEIDVKI MGGDAMIWMQ SLRKNHPAAR LMAALKELGL EVYHANLSVV KEMMVQQATV  600
KISSREYTEE QIRTSLLSRV ATDPRQEHGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	442	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-150	bHLH family protein