PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60048.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 417aa    MW: 44840.8 Da    PI: 9.8962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05171193223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  Cp Cg++F+ +++L+ H+ + H
  PKA60048.1 171 ACPLCGEVFTKSDSLELHQTLcH 193
                 6******************9955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MALTSFLPAT ADHHRHHHSR RKKKKQSYER PTPPRPPAAV KPPILSSWEH FKSLLNCRSG  60
ADAAQAHVPS AGKIWCRPSI CSLRDAVNGG ARVVNRPDVD HNSGDSGPLS CSSSTRETDP  120
LTLRRRPVLS GGSGGSRGGM QLMRLSGCYE CRAVDAEPPS RRYPRPRTLC ACPLCGEVFT  180
KSDSLELHQT LCHAELGAED SGRSIVEIIF MSSWQKKNRS ICSIERILKI HNSSRTISRF  240
EDYRSAVKTR AIHLTSAATG GGNGGASSQP IISRRNPRCA ADGNELLRFH SSSLSCNLGA  300
GGSTALCSAA ACSVCSIILH GFRRPHHPLG VRTTASSSRA HDHSFASGGR GRTAMLVCRV  360
IAGRIRRPSE EDDGGAASVV YDSVAGDGGP RANLEELFVA NPRAILPCFV VIYQALN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RRKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-73C2H2 family protein