PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60054.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 314aa MW: 32648.2 Da PI: 8.6445

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.5	3.3e-36	59	162	6	115
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksa 104 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a++ai+++tgt++ +a ++ +++ + +++ +a+s a+ +++k++ PKA60054.1 59 RRSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEHAIIAATGTGTVPAIAT-TVNG-----ALKIPTEATSPAPIANAEKDS 151 79**********************************************************77777333.1111.....122222333333222222222 PP TCP 105 asalnlakesr 115 + + a++ r PKA60054.1 152 GAGEESARKRR 162 22222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MGNQEKECDA GNLDSGGGRR AEATLSIAAV PVQQRLIVPK PEEVEMVGEA LPIIRRPPRR 60 SKDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQHAEH AIIAATGTGT 120 VPAIATTVNG ALKIPTEATS PAPIANAEKD SGAGEESARK RRRKMQPSRS VAGGTVIGYF 180 HGPDPLLPAG GAISISAGLA PIAAAPGMLP MWAVGGASAP PALWMFPSAA AVAAIPASPA 240 QIWAFPPSQV VSLKAVRPNT GTTAECAPAT IDAGDSAEKE AELSRGVAAY GPHREEEGRE 300 AEGPPSELCS YPGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	ARKRRRKMQ
2	159	163	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-44	TCP family protein