PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60078.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 167aa    MW: 18047.9 Da    PI: 5.22
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174264123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ C++ F++   L  H+++H
  PKA60078.1 42 YNCSFCHREFRSAQALGGHMNVH 64
                89*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MSSWSFYGGA AADAGDDESW EVRAFAADTA SGLGTTWPPR FYNCSFCHRE FRSAQALGGH  60
MNVHRRDRAR LQQLRPPSPQ AILPSPEICL LHPAAGPAHP PFPPPMHVRY NLRAASIGFG  120
SPAANEEESS LLEKVGLSGS SSDRSGEDDN GGDSMVEDLD LELRLGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.18e-25C2H2 family protein