PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60195.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 666aa MW: 72797.5 Da PI: 6.5551

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99	4.1e-31	109	193	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWeevs+k++e g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea PKA60195.1 109 RWPRQETLALLKIRSEMDAAFRDATLKGPLWEEVSRKLAEMGYTRSSKKCKEKFENVQKYYKRTKDGRARRHDGRS--YRFFSQLEA 193 8*******************************************************************865555..*****85 PP
2	trihelix	100.1	1.8e-31	436	520	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ me ++ + k+plWee+s m++ g+ rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+ PKA60195.1 436 RWPKTEVHALIKLRSGMEAKYMEMGPKGPLWEEISMEMKKLGYDRSSKRCKEKWENINKYFKKVKESNKKR-PEDGKTCPYFHQLD 520 8*******************************************************************8.99999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MQQQGGPQYG MPPPEIASHF STGGGGGRKQ QMMGIPGAGD RGGQPVVEVA SPISSRPPPQ 60 QQLVAARQQA AVFDEFGGGA GGGDVGGSFG EEEALGGAGE EAERGSVSRW PRQETLALLK 120 IRSEMDAAFR DATLKGPLWE EVSRKLAEMG YTRSSKKCKE KFENVQKYYK RTKDGRARRH 180 DGRSYRFFSQ LEALHKPTVA VTAPATGVIT TPSQQAPIPA PAMAPTVISF SSDTFSSSPS 240 DSDGEETEDG RGGRSRKRKR GGWRQGGGVR KTMAFIEGLM KQVVERQEAM QQRFLEAMEK 300 RENDRMIREE AWKRQEMARI NREYELMAQE RANAANRDAA VISFLQKFVG AAPPTPTPPP 360 AAAEQAVKQG TPLPLLPALT FLEPASLEMP DFQASAKEGR QRKVIPLHPL TSSEPSSSEV 420 PEALEAEFLP AATPSRWPKT EVHALIKLRS GMEAKYMEMG PKGPLWEEIS MEMKKLGYDR 480 SSKRCKEKWE NINKYFKKVK ESNKKRPEDG KTCPYFHQLD VLYRKKQTPP PQPTAVPPLA 540 EQSSNNGVRI ANSGDHGPSS NGGLPEGFFL ESSNSSAGGG SKKKGEEMSS KDDIDKLREG 600 GDSDININHE EDDDYEEDDE DEEEEGKLRY EIQFQRQTVG TGAAAAAAGS EKAAAASSGA 660 FLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MQQQGGPQYG MPPPEIASHF STGGGGGRKQ QMMGIPGAGD RGGQPVVEVA SPISSRPPPQ  60
QQLVAARQQA AVFDEFGGGA GGGDVGGSFG EEEALGGAGE EAERGSVSRW PRQETLALLK  120
IRSEMDAAFR DATLKGPLWE EVSRKLAEMG YTRSSKKCKE KFENVQKYYK RTKDGRARRH  180
DGRSYRFFSQ LEALHKPTVA VTAPATGVIT TPSQQAPIPA PAMAPTVISF SSDTFSSSPS  240
DSDGEETEDG RGGRSRKRKR GGWRQGGGVR KTMAFIEGLM KQVVERQEAM QQRFLEAMEK  300
RENDRMIREE AWKRQEMARI NREYELMAQE RANAANRDAA VISFLQKFVG AAPPTPTPPP  360
AAAEQAVKQG TPLPLLPALT FLEPASLEMP DFQASAKEGR QRKVIPLHPL TSSEPSSSEV  420
PEALEAEFLP AATPSRWPKT EVHALIKLRS GMEAKYMEMG PKGPLWEEIS MEMKKLGYDR  480
SSKRCKEKWE NINKYFKKVK ESNKKRPEDG KTCPYFHQLD VLYRKKQTPP PQPTAVPPLA  540
EQSSNNGVRI ANSGDHGPSS NGGLPEGFFL ESSNSSAGGG SKKKGEEMSS KDDIDKLREG  600
GDSDININHE EDDDYEEDDE DEEEEGKLRY EIQFQRQTVG TGAAAAAAGS EKAAAASSGA  660
FLAMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-45	Trihelix family protein