PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60216.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 197aa    MW: 21997.2 Da    PI: 4.6876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-144892554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                + ++ErrRRd++N+++  Lr+l+P+      +K+sK ++L  A++YIk L
  PKA60216.1 48 NLKAERRRRDKLNQSIYALRSLVPNI-----TKMSKESTLADAIDYIKIL 92
                5689*********************7.....7***************977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MPRRPREFAF EADAMDLVDS MLEGLDDDAF TDSAAVEDDG DQKFKSKNLK AERRRRDKLN  60
QSIYALRSLV PNITKMSKES TLADAIDYIK ILEKEVVDLQ IELSGVQTEE GEKPGILSAT  120
ETTKPLQDAV PFKGMVQLCS LGKNKFHLKV TMEKRIGGFT KLLEAVSQLG LEVTEVTTVS  180
FSDIYQGALC LEVRSIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERRRRD
25358RRRRDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-26bHLH family protein