PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60225.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARR-B

Protein Properties

Length: 561aa MW: 63854.3 Da PI: 5.723

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79.4	4.3e-25	202	255	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G ek Pk+il+lm+v+gLt+e+v+SHLQkYRl PKA60225.1 202 KARVVWSVNLHQKFVNAVDQI-GFEKVGPKKILDLMNVPGLTRENVASHLQKYRL 255 68*****************.9*****************************8 PP
2	Myb_DNA-binding	35.6	2.1e-11	204	254	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ +++++v+av q G + +k+I m+ g+t++++ s++qky+ PKA60225.1 204 RVVWSVNLHQKFVNAVDQIGFEkvGPKKILDLMNvPGLTRENVASHLQKYR 254 678***********************************************7 PP
3	Response_reg	78	3.2e-26	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++l+++l+k y ev++ ++++al+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga PKA60225.1 21 VLVVDDDLTWLKILEKMLRKCSY-EVTTSCKARAALDLLRERKdkFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 115 89*******************.***********888778******************6644.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el + PKA60225.1 116 DYLLKPIRMKELKN 129 ********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MQMENPSASS RAESFPCGLR VLVVDDDLTW LKILEKMLRK CSYEVTTSCK ARAALDLLRE 60 RKDKFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK 120 PIRMKELKNI WQHVYRKRIH EVKDLEGHDI SEDIHILRSG SEIVDDRFLV SASELSSLRK 180 RRDLETREFS DQELSDTATV KKARVVWSVN LHQKFVNAVD QIGFEKVGPK KILDLMNVPG 240 LTRENVASHL QKYRLYLSRL QKQNEAKAVG GGNRDHCKDR SGHHVGQRNL NTFIQNTGDN 300 NRYFYNDQKN QVQCMIQDVR EPELKTRVSL PVTDKNGAVK LGVHHSGLLI PFKGMLPKSD 360 EKLAYPSNST QVLQFTQYPK HDHEPFSLFE DYSHVAQYKP QIAFELPRNC PPSLVSIICN 420 KEKDKDGLFS LKSPMVDSEP SNASDLIFVQ LEHGVVNPEE LGGTCSNNNE PSSKEKNYEQ 480 THGLDLILPR NEANFVDLPE ELNVCSLQSL GWLENVGFDG ITDASTFAEF YGNGYDGMEF 540 NSEYFYDSLD YPFMDGCLFA Q

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MQMENPSASS RAESFPCGLR VLVVDDDLTW LKILEKMLRK CSYEVTTSCK ARAALDLLRE  60
RKDKFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELKNI WQHVYRKRIH EVKDLEGHDI SEDIHILRSG SEIVDDRFLV SASELSSLRK  180
RRDLETREFS DQELSDTATV KKARVVWSVN LHQKFVNAVD QIGFEKVGPK KILDLMNVPG  240
LTRENVASHL QKYRLYLSRL QKQNEAKAVG GGNRDHCKDR SGHHVGQRNL NTFIQNTGDN  300
NRYFYNDQKN QVQCMIQDVR EPELKTRVSL PVTDKNGAVK LGVHHSGLLI PFKGMLPKSD  360
EKLAYPSNST QVLQFTQYPK HDHEPFSLFE DYSHVAQYKP QIAFELPRNC PPSLVSIICN  420
KEKDKDGLFS LKSPMVDSEP SNASDLIFVQ LEHGVVNPEE LGGTCSNNNE PSSKEKNYEQ  480
THGLDLILPR NEANFVDLPE ELNVCSLQSL GWLENVGFDG ITDASTFAEF YGNGYDGMEF  540
NSEYFYDSLD YPFMDGCLFA Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-112	ARR-B family protein