PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60230.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 1312aa MW: 145524 Da PI: 8.9734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	1184	1207	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 y+C C++sFs+k +L H r PKA60230.1 1184 YTCDieGCSMSFSTKQELSLHKRD 1207 99*******************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1312 aa Download sequence
MAAEPPLAEV LPWLKSLPVG PEYHPTLAEF RDPIAYILKI EKEASAYGIC KIVPPLPPAP 60 KKTAIANLNR SFASREPKPS PNAPNPNSKR SPTFSTRHQQ IGFCPRRPRP VQKPVWQSGD 120 VYTLSQFEAK AKLFERSYLS KSTSAAAGTA PCSSTRKKRK DKVNKRRAKT KLSPSPLSPL 180 ELETLFWKAC ADKPFTVEYA NDMPGSGFAP IGGGTGKRWI EGASSNVGET AWNMRGVSRA 240 KGSLLRFMKE EIPGVTSPMV YVAMMFSWFA WHVEDHELHS LNYLHIGAGK TWYGVPRDAA 300 LAFEEVVRVH GYCGEVNPLM TFTILGEKTT VMSPEVLIDA GIPCCRLVQN AGEYVVTFPG 360 SYHCGFSHGF NCGEAANIAT PGWLRVAKEA AIRRASTNYP PMLSHFQLLY ALALSLHSRE 420 PMCGSSEPRS SRLKNKMRGE GDSIVKRTFV QSVADNNNLL SYLQEKGSSC VVLPLNAPSS 480 SLSSNSLVRS QVKVKPRLSL GLCSREEALE ASKSLPSNDI MLEINAGIKH LLSENKLAVY 540 HRKKHTSSNN RFLSADISSS ASCSQNAVDE KESNFQGEGV LDQGLLSCVT CGILSFACVA 600 VVKPTELAAR YLLSADCCSL DDQRIGSGKI SDVANDANWK GSNCDLTLGS GQKDKPINRL 660 YDNLVQVLDH IVEVGPETST KKDSSALDLL ASAYGGESSE SDDEQIPREA STCTHVNYQQ 720 DTLLSRKLHH HSRVATKHPD LWFGKVPFAA VEQQLTGGKY QNTSTENCQR STVCNELNGL 780 RSVNIEEVIP QKLDSPRSQA ELLRSEFLNN TEDGGEAVAS SSSIKLMREP ISSCERELDG 840 NYPDTATAYF HRNNMKMPDA TCGSSDYSVP SEINQTTQAS RERPDKDSSR MHVFCLEHAV 900 EVEKKLCPIG GVNIMLLCHS DYPKIEAEAK ALSDELGFDF SWKVIDFQEA TGKDLEKIGA 960 ALKDEETIPT NSDWAVKLGI NLYYSACLSK SPLYSKQMPY NAVIYKAFGL PNNTMEPKAN 1020 GKRPGRQKKI VVAGKWCGKV WMLNQVHPYL AWKDDQDQEM DAGADITSII PVTVTESKGS 1080 SANDNNSTPM GKLRKRKKKP LVKSAAKRLR PKQQDESFKA SEDDSRILRS SDKSSHKDNT 1140 EGGPSSRLRR RTAAKLIDTK FVERKPTKQK EKGKAKRNFD EGEYTCDIEG CSMSFSTKQE 1200 LSLHKRDICP VKGCGKKLFS HKYMMQHRKV HIDDRPLECP WKGCKMTFKW PWARTEHIRV 1260 HTGDRPYICR EPGCNQTFRF VSDFSRHKRK TGHSFFALCI LSKMIEAKSG SK

Sequence ? help Back to Top

Protein Sequence Length: 1312 aa Download sequence

MAAEPPLAEV LPWLKSLPVG PEYHPTLAEF RDPIAYILKI EKEASAYGIC KIVPPLPPAP  60
KKTAIANLNR SFASREPKPS PNAPNPNSKR SPTFSTRHQQ IGFCPRRPRP VQKPVWQSGD  120
VYTLSQFEAK AKLFERSYLS KSTSAAAGTA PCSSTRKKRK DKVNKRRAKT KLSPSPLSPL  180
ELETLFWKAC ADKPFTVEYA NDMPGSGFAP IGGGTGKRWI EGASSNVGET AWNMRGVSRA  240
KGSLLRFMKE EIPGVTSPMV YVAMMFSWFA WHVEDHELHS LNYLHIGAGK TWYGVPRDAA  300
LAFEEVVRVH GYCGEVNPLM TFTILGEKTT VMSPEVLIDA GIPCCRLVQN AGEYVVTFPG  360
SYHCGFSHGF NCGEAANIAT PGWLRVAKEA AIRRASTNYP PMLSHFQLLY ALALSLHSRE  420
PMCGSSEPRS SRLKNKMRGE GDSIVKRTFV QSVADNNNLL SYLQEKGSSC VVLPLNAPSS  480
SLSSNSLVRS QVKVKPRLSL GLCSREEALE ASKSLPSNDI MLEINAGIKH LLSENKLAVY  540
HRKKHTSSNN RFLSADISSS ASCSQNAVDE KESNFQGEGV LDQGLLSCVT CGILSFACVA  600
VVKPTELAAR YLLSADCCSL DDQRIGSGKI SDVANDANWK GSNCDLTLGS GQKDKPINRL  660
YDNLVQVLDH IVEVGPETST KKDSSALDLL ASAYGGESSE SDDEQIPREA STCTHVNYQQ  720
DTLLSRKLHH HSRVATKHPD LWFGKVPFAA VEQQLTGGKY QNTSTENCQR STVCNELNGL  780
RSVNIEEVIP QKLDSPRSQA ELLRSEFLNN TEDGGEAVAS SSSIKLMREP ISSCERELDG  840
NYPDTATAYF HRNNMKMPDA TCGSSDYSVP SEINQTTQAS RERPDKDSSR MHVFCLEHAV  900
EVEKKLCPIG GVNIMLLCHS DYPKIEAEAK ALSDELGFDF SWKVIDFQEA TGKDLEKIGA  960
ALKDEETIPT NSDWAVKLGI NLYYSACLSK SPLYSKQMPY NAVIYKAFGL PNNTMEPKAN  1020
GKRPGRQKKI VVAGKWCGKV WMLNQVHPYL AWKDDQDQEM DAGADITSII PVTVTESKGS  1080
SANDNNSTPM GKLRKRKKKP LVKSAAKRLR PKQQDESFKA SEDDSRILRS SDKSSHKDNT  1140
EGGPSSRLRR RTAAKLIDTK FVERKPTKQK EKGKAKRNFD EGEYTCDIEG CSMSFSTKQE  1200
LSLHKRDICP VKGCGKKLFS HKYMMQHRKV HIDDRPLECP WKGCKMTFKW PWARTEHIRV  1260
HTGDRPYICR EPGCNQTFRF VSDFSRHKRK TGHSFFALCI LSKMIEAKSG SK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	RKKRKD
2	156	162	RKKRKDK
3	1093	1100	LRKRKKKP
4	1094	1098	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein